import time from typing import Union, Callable import numpy as np import jax from jax import jit, vmap from algorithms import neat from configs.configer import Configer class Pipeline: """ Neat algorithm pipeline. """ def __init__(self, config): self.config = config # global config self.jit_config = Configer.create_jit_config(config) self.best_genome = None self.neat_states = neat.initialize(config) self.best_fitness = float('-inf') self.generation_timestamp = time.time() self.evaluate_time = 0 self.randkey, self.pop_nodes, self.pop_cons, self.species_info, self.idx2species, self.center_nodes, \ self.center_cons, self.generation, self.next_node_key, self.next_species_key = neat.initialize(config) self.forward = neat.create_forward_function(config) self.pop_unflatten_connections = jit(vmap(neat.unflatten_connections)) self.pop_topological_sort = jit(vmap(neat.topological_sort)) # self.tell_func = neat.tell.lower(np.zeros(config['pop_size'], dtype=np.float32), # self.randkey, # self.pop_nodes, # self.pop_cons, # self.species_info, # self.idx2species, # self.center_nodes, # self.center_cons, # self.generation, # self.next_node_key, # self.next_species_key, # self.jit_config).compile() def ask(self): """ Creates a function that receives a genome and returns a forward function. There are 3 types of config['forward_way']: {'single', 'pop', 'common'} single: Create pop_size number of forward functions. Each function receive (batch_size, input_size) and returns (batch_size, output_size) e.g. RL task pop: Create a single forward function, which use only once calculation for the population. The function receives (pop_size, batch_size, input_size) and returns (pop_size, batch_size, output_size) common: Special case of pop. The population has the same inputs. The function receives (batch_size, input_size) and returns (pop_size, batch_size, output_size) e.g. numerical regression; Hyper-NEAT """ u_pop_cons = self.pop_unflatten_connections(self.pop_nodes, self.pop_cons) pop_seqs = self.pop_topological_sort(self.pop_nodes, u_pop_cons) # only common mode is supported currently assert self.config['forward_way'] == 'common' return lambda x: self.forward(x, pop_seqs, self.pop_nodes, u_pop_cons) def tell(self, fitness): self.randkey, self.pop_nodes, self.pop_cons, self.species_info, self.idx2species, self.center_nodes, \ self.center_cons, self.generation, self.next_node_key, self.next_species_key = neat.tell(fitness, self.randkey, self.pop_nodes, self.pop_cons, self.species_info, self.idx2species, self.center_nodes, self.center_cons, self.generation, self.next_node_key, self.next_species_key, self.jit_config) def auto_run(self, fitness_func, analysis: Union[Callable, str] = "default"): for _ in range(self.config['generation_limit']): forward_func = self.ask() tic = time.time() fitnesses = fitness_func(forward_func) self.evaluate_time += time.time() - tic # assert np.all(~np.isnan(fitnesses)), "fitnesses should not be nan!" if analysis is not None: if analysis == "default": self.default_analysis(fitnesses) else: assert callable(analysis), f"What the fuck you passed in? A {analysis}?" analysis(fitnesses) if max(fitnesses) >= self.config['fitness_threshold']: print("Fitness limit reached!") return self.best_genome self.tell(fitnesses) print("Generation limit reached!") return self.best_genome def default_analysis(self, fitnesses): max_f, min_f, mean_f, std_f = max(fitnesses), min(fitnesses), np.mean(fitnesses), np.std(fitnesses) new_timestamp = time.time() cost_time = new_timestamp - self.generation_timestamp self.generation_timestamp = new_timestamp max_idx = np.argmax(fitnesses) if fitnesses[max_idx] > self.best_fitness: self.best_fitness = fitnesses[max_idx] self.best_genome = (self.pop_nodes[max_idx], self.pop_cons[max_idx]) member_count = jax.device_get(self.species_info[:, 3]) species_sizes = [int(i) for i in member_count if i > 0] print(f"Generation: {self.generation}", f"species: {len(species_sizes)}, {species_sizes}", f"fitness: {max_f}, {min_f}, {mean_f}, {std_f}, Cost time: {cost_time}")