Files
tensorneat-mend/neat/genome/aggregations.py
wls2002 0cb2f9473d finish ask part of the algorithm;
use jax.lax.while_loop in graph algorithms and forward function;
fix "enabled not care" bug in forward
2023-06-25 00:26:52 +08:00

70 lines
1.2 KiB
Python

import jax
import jax.numpy as jnp
import numpy as np
from jax import jit
@jit
def sum_agg(z):
z = jnp.where(jnp.isnan(z), 0, z)
return jnp.sum(z, axis=0)
@jit
def product_agg(z):
z = jnp.where(jnp.isnan(z), 1, z)
return jnp.prod(z, axis=0)
@jit
def max_agg(z):
z = jnp.where(jnp.isnan(z), -jnp.inf, z)
return jnp.max(z, axis=0)
@jit
def min_agg(z):
z = jnp.where(jnp.isnan(z), jnp.inf, z)
return jnp.min(z, axis=0)
@jit
def maxabs_agg(z):
z = jnp.where(jnp.isnan(z), 0, z)
abs_z = jnp.abs(z)
max_abs_index = jnp.argmax(abs_z)
return z[max_abs_index]
@jit
def median_agg(z):
non_nan_mask = ~jnp.isnan(z)
n = jnp.sum(non_nan_mask, axis=0)
z = jnp.sort(z) # sort
idx1, idx2 = (n - 1) // 2, n // 2
median = (z[idx1] + z[idx2]) / 2
return median
@jit
def mean_agg(z):
non_zero_mask = ~jnp.isnan(z)
valid_values_sum = sum_agg(z)
valid_values_count = jnp.sum(non_zero_mask, axis=0)
mean_without_zeros = valid_values_sum / valid_values_count
return mean_without_zeros
agg_name2func = {
'sum': sum_agg,
'product': product_agg,
'max': max_agg,
'min': min_agg,
'maxabs': maxabs_agg,
'median': median_agg,
'mean': mean_agg,
}