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tensorneat-mend/algorithms/neat/genome/numpy/aggregations.py
2023-05-06 21:04:28 +08:00

87 lines
1.9 KiB
Python

"""
aggregations, two special case need to consider:
1. extra 0s
2. full of 0s
"""
import numpy as np
def sum_agg(z):
z = np.where(np.isnan(z), 0, z)
return np.sum(z, axis=0)
def product_agg(z):
z = np.where(np.isnan(z), 1, z)
return np.prod(z, axis=0)
def max_agg(z):
z = np.where(np.isnan(z), -np.inf, z)
return np.max(z, axis=0)
def min_agg(z):
z = np.where(np.isnan(z), np.inf, z)
return np.min(z, axis=0)
def maxabs_agg(z):
z = np.where(np.isnan(z), 0, z)
abs_z = np.abs(z)
max_abs_index = np.argmax(abs_z)
return z[max_abs_index]
def median_agg(z):
non_zero_mask = ~np.isnan(z)
n = np.sum(non_zero_mask, axis=0)
z = np.where(np.isnan(z), np.inf, z)
sorted_valid_values = np.sort(z)
if n % 2 == 0:
return (sorted_valid_values[n // 2 - 1] + sorted_valid_values[n // 2]) / 2
else:
return sorted_valid_values[n // 2]
def mean_agg(z):
non_zero_mask = ~np.isnan(z)
valid_values_sum = sum_agg(z)
valid_values_count = np.sum(non_zero_mask, axis=0)
mean_without_zeros = valid_values_sum / valid_values_count
return mean_without_zeros
AGG_TOTAL_LIST = [sum_agg, product_agg, max_agg, min_agg, maxabs_agg, median_agg, mean_agg]
agg_name2key = {
'sum': 0,
'product': 1,
'max': 2,
'min': 3,
'maxabs': 4,
'median': 5,
'mean': 6,
}
def agg(idx, z):
idx = np.asarray(idx, dtype=np.int32)
if np.all(z == 0.):
return 0
else:
return AGG_TOTAL_LIST[idx](z)
if __name__ == '__main__':
array = np.asarray([1, 2, np.nan, np.nan, 3, 4, 5, np.nan, np.nan, np.nan, np.nan], dtype=np.float32)
for names in agg_name2key.keys():
print(names, agg(agg_name2key[names], array))
array2 = np.asarray([0, 0, 0, 0], dtype=np.float32)
for names in agg_name2key.keys():
print(names, agg(agg_name2key[names], array2))