wls2002 5bd6e5c357 add "update_by_batch" in gene; ...

add flatten_conns as an inverse function for unflatten_conns;
add "test_flatten.ipynb" as test for them.

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..

__init__.py

complete fully stateful!

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activation.py

use black format all files;

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aggregation.py

use black format all files;

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graph.py

use black format all files;

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state.py

use black format all files;

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tools.py

add "update_by_batch" in gene;

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