190 lines
6.2 KiB
Python
190 lines
6.2 KiB
Python
import json
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import os
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import jax, jax.numpy as jnp
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import datetime, time
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import numpy as np
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from tensorneat.algorithm import BaseAlgorithm
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from tensorneat.problem import BaseProblem
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from tensorneat.common import State, StatefulBaseClass
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class Pipeline(StatefulBaseClass):
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def __init__(
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self,
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algorithm: BaseAlgorithm,
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problem: BaseProblem,
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seed: int = 42,
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fitness_target: float = 1,
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generation_limit: int = 1000,
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is_save: bool = False,
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save_dir=None,
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):
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assert problem.jitable, "Currently, problem must be jitable"
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self.algorithm = algorithm
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self.problem = problem
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self.seed = seed
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self.fitness_target = fitness_target
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self.generation_limit = generation_limit
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self.pop_size = self.algorithm.pop_size
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np.random.seed(self.seed)
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assert (
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algorithm.num_inputs == self.problem.input_shape[-1]
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), f"algorithm input shape is {algorithm.num_inputs} but problem input shape is {self.problem.input_shape}"
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self.best_genome = None
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self.best_fitness = float("-inf")
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self.generation_timestamp = None
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self.is_save = is_save
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if is_save:
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if save_dir is None:
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now = datetime.datetime.now().strftime("%Y%m%d%H%M%S")
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self.save_dir = f"./{self.__class__.__name__} {now}"
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else:
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self.save_dir = save_dir
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print(f"save to {self.save_dir}")
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if not os.path.exists(self.save_dir):
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os.makedirs(self.save_dir)
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self.genome_dir = os.path.join(self.save_dir, "genomes")
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if not os.path.exists(self.genome_dir):
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os.makedirs(self.genome_dir)
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def setup(self, state=State()):
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print("initializing")
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state = state.register(randkey=jax.random.PRNGKey(self.seed))
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state = self.algorithm.setup(state)
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state = self.problem.setup(state)
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if self.is_save:
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# self.save(state=state, path=os.path.join(self.save_dir, "pipeline.pkl"))
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with open(os.path.join(self.save_dir, "config.txt"), "w") as f:
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f.write(json.dumps(self.show_config(), indent=4))
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# create log file
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with open(os.path.join(self.save_dir, "log.txt"), "w") as f:
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f.write("Generation,Max,Min,Mean,Std,Cost Time\n")
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print("initializing finished")
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return state
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def step(self, state):
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randkey_, randkey = jax.random.split(state.randkey)
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keys = jax.random.split(randkey_, self.pop_size)
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pop = self.algorithm.ask(state)
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pop_transformed = jax.vmap(self.algorithm.transform, in_axes=(None, 0))(
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state, pop
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)
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fitnesses = jax.vmap(self.problem.evaluate, in_axes=(None, 0, None, 0))(
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state, keys, self.algorithm.forward, pop_transformed
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)
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# replace nan with -inf
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fitnesses = jnp.where(jnp.isnan(fitnesses), -jnp.inf, fitnesses)
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previous_pop = self.algorithm.ask(state)
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state = self.algorithm.tell(state, fitnesses)
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return state.update(randkey=randkey), previous_pop, fitnesses
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def auto_run(self, state):
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print("start compile")
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tic = time.time()
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compiled_step = jax.jit(self.step).lower(state).compile()
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# compiled_step = self.step
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print(
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f"compile finished, cost time: {time.time() - tic:.6f}s",
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)
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for _ in range(self.generation_limit):
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self.generation_timestamp = time.time()
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state, previous_pop, fitnesses = compiled_step(state)
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fitnesses = jax.device_get(fitnesses)
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self.analysis(state, previous_pop, fitnesses)
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if max(fitnesses) >= self.fitness_target:
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print("Fitness limit reached!")
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break
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if int(state.generation) >= self.generation_limit:
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print("Generation limit reached!")
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if self.is_save:
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best_genome = jax.device_get(self.best_genome)
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with open(os.path.join(self.genome_dir, f"best_genome.npz"), "wb") as f:
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np.savez(
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f,
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nodes=best_genome[0],
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conns=best_genome[1],
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fitness=self.best_fitness,
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)
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return state, self.best_genome
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def analysis(self, state, pop, fitnesses):
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generation = int(state.generation)
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valid_fitnesses = fitnesses[~np.isinf(fitnesses)]
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max_f, min_f, mean_f, std_f = (
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max(valid_fitnesses),
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min(valid_fitnesses),
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np.mean(valid_fitnesses),
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np.std(valid_fitnesses),
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)
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new_timestamp = time.time()
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cost_time = new_timestamp - self.generation_timestamp
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max_idx = np.argmax(fitnesses)
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if fitnesses[max_idx] > self.best_fitness:
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self.best_fitness = fitnesses[max_idx]
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self.best_genome = pop[0][max_idx], pop[1][max_idx]
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if self.is_save:
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# save best
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best_genome = jax.device_get((pop[0][max_idx], pop[1][max_idx]))
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file_name = os.path.join(
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self.genome_dir, f"{generation}.npz"
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)
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with open(file_name, "wb") as f:
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np.savez(
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f,
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nodes=best_genome[0],
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conns=best_genome[1],
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fitness=self.best_fitness,
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)
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# append log
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with open(os.path.join(self.save_dir, "log.txt"), "a") as f:
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f.write(
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f"{generation},{max_f},{min_f},{mean_f},{std_f},{cost_time}\n"
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)
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print(
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f"Generation: {generation}, Cost time: {cost_time * 1000:.2f}ms\n",
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f"\tfitness: valid cnt: {len(valid_fitnesses)}, max: {max_f:.4f}, min: {min_f:.4f}, mean: {mean_f:.4f}, std: {std_f:.4f}\n",
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)
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self.algorithm.show_details(state, fitnesses)
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def show(self, state, best, *args, **kwargs):
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transformed = self.algorithm.transform(state, best)
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self.problem.show(
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state, state.randkey, self.algorithm.forward, transformed, *args, **kwargs
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)
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