CHORUS/docs/comprehensive/PROGRESS.md

CHORUS Documentation Progress

Started: 2025-09-30 Branch: docs/comprehensive-documentation Status: Phase 2 In Progress

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Completion Summary

✅ Phase 1: Foundation (COMPLETE)

Completed Files:

1. README.md - Master index with navigation (313 lines)
2. architecture/README.md - System architecture overview (580 lines)
3. commands/chorus-agent.md - Autonomous agent documentation (737 lines)
4. commands/chorus-hap.md - Human Agent Portal documentation (1,410 lines)
5. commands/chorus.md - Deprecated wrapper documentation (909 lines)

Statistics:

• Total Lines: 3,949
• Total Words: ~18,500
• Files Created: 5

Coverage:

• ✅ Documentation infrastructure
• ✅ Architecture overview
• ✅ All 3 command-line binaries
• ✅ Master index with cross-references

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🔶 Phase 2: Core Packages (IN PROGRESS)

Completed Files:

1. packages/execution.md - Task execution engine (full API documentation)
2. packages/config.md - Configuration management (complete env vars reference)
3. internal/runtime.md - Shared P2P runtime infrastructure (complete lifecycle)

In Progress:

• packages/dht.md - Distributed hash table
• packages/crypto.md - Encryption and cryptography
• packages/ucxl.md - UCXL validation system
• packages/shhh.md - Secrets management

Remaining High-Priority Packages:

• packages/election.md - Leader election
• packages/slurp/README.md - Distributed coordination (8 subpackages)
• packages/ai.md - AI provider interfaces
• packages/providers.md - Concrete AI implementations
• packages/coordination.md - Task coordination
• packages/metrics.md - Monitoring and telemetry
• packages/health.md - Health checks
• internal/licensing.md - License validation
• internal/hapui.md - HAP terminal/web interface
• api/README.md - HTTP API layer
• pubsub/README.md - PubSub messaging

Statistics So Far (Phase 2):

• Files Completed: 3
• Estimated Lines: ~4,500
• Remaining Packages: 25+

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Total Progress

By Category

Category	Complete	In Progress	Pending	Total
Commands	3	0	0	3
Architecture	1	0	4	5
Core Packages	3	4	18	25
Internal Packages	1	0	7	8
API/Integration	0	0	3	3
Diagrams	0	0	3	3
Deployment	0	0	5	5
Total	8	4	40	52

By Status

• ✅ Complete: 8 files (15%)
• 🔶 In Progress: 4 files (8%)
• ⏳ Pending: 40 files (77%)

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Package Priority Matrix

Priority 1: Critical Path (Must Document)

These packages are essential for understanding CHORUS:

• pkg/execution - Task execution engine
• pkg/config - Configuration management
• internal/runtime - Shared runtime
• pkg/dht - Distributed storage
• pkg/election - Leader election
• pkg/ucxl - Decision validation
• pkg/crypto - Encryption
• pkg/shhh - Secrets management
• internal/licensing - License validation

Status: 3/9 complete (33%)

Priority 2: Coordination & AI (Core Features)

• pkg/slurp/* - Distributed coordination (8 files)
• pkg/coordination - Task coordination
• pkg/ai - AI provider interfaces
• pkg/providers - AI implementations
• pkg/metrics - Monitoring
• pkg/health - Health checks
• internal/agent - Agent implementation

Status: 0/15 complete (0%)

Priority 3: Integration & Infrastructure

• api/* - HTTP API layer (3 files)
• pubsub/* - PubSub messaging (3 files)
• pkg/repository - Git operations
• pkg/mcp - Model Context Protocol
• pkg/ucxi - UCXI server
• internal/hapui - HAP interface
• internal/backbeat - P2P telemetry

Status: 0/12 complete (0%)

Priority 4: Supporting Packages

• pkg/agentid - Agent identity
• pkg/bootstrap - System bootstrapping
• pkg/prompt - Prompt management
• pkg/security - Security policies
• pkg/storage - Storage abstractions
• pkg/types - Common types
• pkg/version - Version info
• pkg/web - Web server
• pkg/shutdown - Shutdown coordination
• pkg/hmmm - HMMM integration
• pkg/hmmm_adapter - HMMM adapter
• pkg/integration - Integration utilities
• pkg/protocol - Protocol definitions

Status: 0/13 complete (0%)

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Documentation Quality Metrics

Content Completeness

For each completed package, documentation includes:

• ✅ Package overview and purpose
• ✅ Complete API reference (all exported symbols)
• ✅ Implementation details with line numbers
• ✅ Configuration options
• ✅ Usage examples (minimum 3)
• ✅ Implementation status tracking
• ✅ Error handling documentation
• ✅ Cross-references to related docs
• ✅ Troubleshooting section

Code Coverage

• Source Lines Analyzed: ~2,500+ lines
• Functions Documented: 50+
• Types Documented: 40+
• Examples Provided: 15+

Cross-Reference Density

• Internal Links: 75+ cross-references
• External Links: 10+ (Docker, libp2p, etc.)
• Bidirectional Links: Yes (forward and backward)

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Remaining Work Estimate

By Time Investment

Phase	Files	Est. Lines	Est. Hours	Status
Phase 1: Foundation	5	3,949	8h	✅ Complete
Phase 2: Core Packages (P1)	9	~8,000	16h	🔶 33%
Phase 3: Coordination & AI (P2)	15	~12,000	24h	⏳ Pending
Phase 4: Integration (P3)	12	~10,000	20h	⏳ Pending
Phase 5: Supporting (P4)	13	~8,000	16h	⏳ Pending
Phase 6: Diagrams	3	~1,000	4h	⏳ Pending
Phase 7: Deployment	5	~4,000	8h	⏳ Pending
Phase 8: Review & Index	-	~2,000	8h	⏳ Pending
Total	62	~49,000	104h	15%

Conservative Estimates

With context limitations and agent assistance:

• Optimistic: 40 hours (with multiple agents)
• Realistic: 60 hours (serial documentation)
• Conservative: 80 hours (detailed analysis)

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Next Steps

Immediate (Next 2-4 Hours)

1. Complete Priority 1 packages (6 remaining)

   • pkg/dht and pkg/crypto
   • pkg/ucxl and pkg/shhh
   • pkg/election
   • internal/licensing

2. Commit Phase 2 documentation

Short Term (Next 8 Hours)

3. Document Priority 2 packages (coordination & AI)

   • All 8 pkg/slurp/* subpackages
   • pkg/coordination
   • pkg/ai and pkg/providers
   • pkg/metrics and pkg/health

4. Commit Phase 3 documentation

Medium Term (Next 16 Hours)

5. Document Priority 3 packages (integration)

   • API layer
   • PubSub messaging
   • Internal packages

6. Commit Phase 4 documentation

Long Term (Remaining)

7. Document Priority 4 supporting packages
8. Create architecture diagrams (Mermaid/ASCII)
9. Create sequence diagrams for key workflows
10. Document deployment configurations
11. Build cross-reference index
12. Final review and validation

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Git Commit History

Commits So Far

1. Phase 1 Commit (bd19709)

   docs: Add comprehensive documentation foundation (Phase 1: Architecture & Commands)
   - Master index and navigation
   - Complete architecture overview
   - All 3 command binaries documented
   - 3,875 insertions
   

Pending Commits

2. Phase 2 Commit (upcoming)

   docs: Add core package documentation (Phase 2: Execution, Config, Runtime)
   - pkg/execution complete API reference
   - pkg/config environment variables
   - internal/runtime lifecycle management
   - ~4,500 insertions
   

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Documentation Standards

Format Consistency

All package docs follow standard structure:

1. Header (package, files, status, purpose)
2. Overview
3. Package Interface (exports)
4. Core Types (detailed)
5. Implementation Details
6. Configuration
7. Usage Examples (3+)
8. Implementation Status
9. Error Handling
10. Related Documentation

Markdown Features Used

• ✅ Tables for structured data
• ✅ Code blocks with syntax highlighting
• ✅ ASCII diagrams for flows
• ✅ Emoji for status indicators
• ✅ Internal links (relative paths)
• ✅ External links (full URLs)
• ✅ Collapsible sections (where supported)
• ✅ Status badges

Status Indicators

• ✅ Production - Fully implemented, tested
• 🔶 Beta - Functional, testing in progress
• 🔷 Alpha - Basic implementation, experimental
• ⏳ Stubbed - Interface defined, placeholder
• ❌ TODO - Planned but not implemented
• ⚠️ Deprecated - Scheduled for removal

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Notes for Continuation

Context Management

Due to token limits, documentation is being created in phases:

• Use TodoWrite to track progress
• Commit frequently (every 3-5 files)
• Reference completed docs for consistency
• Use agents for parallel documentation

Quality Checks

Before marking complete:

• All exported symbols documented
• Line numbers referenced for code
• Minimum 3 usage examples
• Implementation status marked
• Cross-references bidirectional
• No broken links
• Consistent formatting

Conversion to HTML

When complete, use pandoc:

cd docs/comprehensive
pandoc -s README.md -o index.html --toc --css=style.css
# Repeat for all .md files

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Last Updated: 2025-09-30 Next Update: After Phase 2 completion